The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes.
Identifieur interne : 000F74 ( Main/Exploration ); précédent : 000F73; suivant : 000F75The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes.
Auteurs : Erica M. Goss [États-Unis] ; Javier F. Tabima [États-Unis] ; David E L. Cooke [Royaume-Uni] ; Silvia Restrepo [Colombie] ; William E. Fry [États-Unis] ; Gregory A. Forbes [République populaire de Chine] ; Valerie J. Fieland [États-Unis] ; Martha Cardenas [Colombie] ; Niklaus J. Grünwald [États-Unis]Source :
- Proceedings of the National Academy of Sciences of the United States of America [ 1091-6490 ] ; 2014.
Descripteurs français
- KwdFr :
- Algorithmes (MeSH), Analyse en composantes principales (MeSH), Colombie (MeSH), Données de séquences moléculaires (MeSH), Génotype (MeSH), Géographie (MeSH), Histoire du 19ème siècle (MeSH), Humains (MeSH), Inanition (histoire), Irlande (MeSH), Maladies des plantes (histoire), Mexique (MeSH), Phylogenèse (MeSH), Phytophthora infestans (génétique), Pérou (MeSH), Répétitions microsatellites (MeSH), Solanum tuberosum (parasitologie), Théorème de Bayes (MeSH), Équateur (MeSH), Évolution moléculaire (MeSH).
- MESH :
- génétique : Phytophthora infestans.
- histoire : Inanition, Maladies des plantes.
- parasitologie : Solanum tuberosum.
- Algorithmes, Analyse en composantes principales, Colombie, Données de séquences moléculaires, Génotype, Géographie, Histoire du 19ème siècle, Humains, Irlande, Mexique, Phylogenèse, Pérou, Répétitions microsatellites, Théorème de Bayes, Équateur, Évolution moléculaire.
- Wicri :
English descriptors
- KwdEn :
- Algorithms (MeSH), Bayes Theorem (MeSH), Colombia (MeSH), Ecuador (MeSH), Evolution, Molecular (MeSH), Genotype (MeSH), Geography (MeSH), History, 19th Century (MeSH), Humans (MeSH), Ireland (MeSH), Mexico (MeSH), Microsatellite Repeats (MeSH), Molecular Sequence Data (MeSH), Peru (MeSH), Phylogeny (MeSH), Phytophthora infestans (genetics), Plant Diseases (history), Principal Component Analysis (MeSH), Solanum tuberosum (parasitology), Starvation (history).
- MESH :
- geographic : Colombia, Ecuador, Ireland, Mexico, Peru.
- genetics : Phytophthora infestans.
- history : Plant Diseases, Starvation.
- parasitology : Solanum tuberosum.
- Algorithms, Bayes Theorem, Evolution, Molecular, Genotype, Geography, History, 19th Century, Humans, Microsatellite Repeats, Molecular Sequence Data, Phylogeny, Principal Component Analysis.
Abstract
Phytophthora infestans is a destructive plant pathogen best known for causing the disease that triggered the Irish potato famine and remains the most costly potato pathogen to manage worldwide. Identification of P. infestan's elusive center of origin is critical to understanding the mechanisms of repeated global emergence of this pathogen. There are two competing theories, placing the origin in either South America or in central Mexico, both of which are centers of diversity of Solanum host plants. To test these competing hypotheses, we conducted detailed phylogeographic and approximate Bayesian computation analyses, which are suitable approaches to unraveling complex demographic histories. Our analyses used microsatellite markers and sequences of four nuclear genes sampled from populations in the Andes, Mexico, and elsewhere. To infer the ancestral state, we included the closest known relatives Phytophthora phaseoli, Phytophthora mirabilis, and Phytophthora ipomoeae, as well as the interspecific hybrid Phytophthora andina. We did not find support for an Andean origin of P. infestans; rather, the sequence data suggest a Mexican origin. Our findings support the hypothesis that populations found in the Andes are descendants of the Mexican populations and reconcile previous findings of ancestral variation in the Andes. Although centers of origin are well documented as centers of evolution and diversity for numerous crop plants, the number of plant pathogens with a known geographic origin are limited. This work has important implications for our understanding of the coevolution of hosts and pathogens, as well as the harnessing of plant disease resistance to manage late blight.
DOI: 10.1073/pnas.1401884111
PubMed: 24889615
PubMed Central: PMC4066499
Affiliations:
- Colombie, Royaume-Uni, République populaire de Chine, États-Unis
- Floride, Oregon, Écosse, État de New York
- Pékin
Links toward previous steps (curation, corpus...)
Le document en format XML
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Goss</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611;</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Floride</region></placeName><wicri:cityArea>Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville</wicri:cityArea></affiliation></author><author><name sortKey="Tabima, Javier F" sort="Tabima, Javier F" uniqKey="Tabima J" first="Javier F" last="Tabima">Javier F. Tabima</name><affiliation wicri:level="2"><nlm:affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331;</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Oregon</region></placeName><wicri:cityArea>Department of Botany and Plant Pathology, Oregon State University, Corvallis</wicri:cityArea></affiliation></author><author><name sortKey="Cooke, David E L" sort="Cooke, David E L" uniqKey="Cooke D" first="David E L" last="Cooke">David E L. Cooke</name><affiliation wicri:level="2"><nlm:affiliation>The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland;</nlm:affiliation><country>Royaume-Uni</country><placeName><region type="country">Écosse</region></placeName><wicri:cityArea>The James Hutton Institute, Invergowrie, Dundee DD2 5DA</wicri:cityArea></affiliation></author><author><name sortKey="Restrepo, Silvia" sort="Restrepo, Silvia" uniqKey="Restrepo S" first="Silvia" last="Restrepo">Silvia Restrepo</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biological Sciences, University of the Andes, 110321 Bogota, Colombia;</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Department of Biological Sciences, University of the Andes, 110321 Bogota</wicri:regionArea><wicri:noRegion>110321 Bogota</wicri:noRegion></affiliation></author><author><name sortKey="Fry, William E" sort="Fry, William E" uniqKey="Fry W" first="William E" last="Fry">William E. 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Forbes</name><affiliation wicri:level="1"><nlm:affiliation>CIP China Center for Asia and the Pacific, International Potato Center, Beijing 100081, China;</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>CIP China Center for Asia and the Pacific, International Potato Center, Beijing 100081</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Fieland, Valerie J" sort="Fieland, Valerie J" uniqKey="Fieland V" first="Valerie J" last="Fieland">Valerie J. 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Grünwald</name><affiliation wicri:level="1"><nlm:affiliation>Horticultural Crops Research Laboratory, US Department of Agriculture Agricultural Research Service, Corvallis, OR 97330; andDepartment of Botany and Plant Pathology and Center for Genome Biology and Biocomputing, Oregon State University, Corvallis, OR 97331 grunwaln@science.oregonstate.edu.</nlm:affiliation><country wicri:rule="url">États-Unis</country><wicri:regionArea>Horticultural Crops Research Laboratory, US Department of Agriculture Agricultural Research Service, Corvallis, OR 97330; andDepartment of Botany and Plant Pathology and Center for Genome Biology and Biocomputing, Oregon State University, Corvallis</wicri:regionArea><wicri:noRegion>Corvallis</wicri:noRegion></affiliation></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="eISSN">1091-6490</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Algorithms (MeSH)</term><term>Bayes Theorem (MeSH)</term><term>Colombia (MeSH)</term><term>Ecuador (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Genotype (MeSH)</term><term>Geography (MeSH)</term><term>History, 19th Century (MeSH)</term><term>Humans (MeSH)</term><term>Ireland (MeSH)</term><term>Mexico (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Peru (MeSH)</term><term>Phylogeny (MeSH)</term><term>Phytophthora infestans (genetics)</term><term>Plant Diseases (history)</term><term>Principal Component Analysis (MeSH)</term><term>Solanum tuberosum (parasitology)</term><term>Starvation (history)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Algorithmes (MeSH)</term><term>Analyse en composantes principales (MeSH)</term><term>Colombie (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Génotype (MeSH)</term><term>Géographie (MeSH)</term><term>Histoire du 19ème siècle (MeSH)</term><term>Humains (MeSH)</term><term>Inanition (histoire)</term><term>Irlande (MeSH)</term><term>Maladies des plantes (histoire)</term><term>Mexique (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora infestans (génétique)</term><term>Pérou (MeSH)</term><term>Répétitions microsatellites (MeSH)</term><term>Solanum tuberosum (parasitologie)</term><term>Théorème de Bayes (MeSH)</term><term>Équateur (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Colombia</term><term>Ecuador</term><term>Ireland</term><term>Mexico</term><term>Peru</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="histoire" xml:lang="fr"><term>Inanition</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="history" xml:lang="en"><term>Plant Diseases</term><term>Starvation</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Algorithms</term><term>Bayes Theorem</term><term>Evolution, Molecular</term><term>Genotype</term><term>Geography</term><term>History, 19th Century</term><term>Humans</term><term>Microsatellite Repeats</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Principal Component Analysis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Algorithmes</term><term>Analyse en composantes principales</term><term>Colombie</term><term>Données de séquences moléculaires</term><term>Génotype</term><term>Géographie</term><term>Histoire du 19ème siècle</term><term>Humains</term><term>Irlande</term><term>Mexique</term><term>Phylogenèse</term><term>Pérou</term><term>Répétitions microsatellites</term><term>Théorème de Bayes</term><term>Équateur</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Colombie</term><term>Équateur</term><term>Mexique</term><term>Pérou</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora infestans is a destructive plant pathogen best known for causing the disease that triggered the Irish potato famine and remains the most costly potato pathogen to manage worldwide. Identification of P. infestan's elusive center of origin is critical to understanding the mechanisms of repeated global emergence of this pathogen. There are two competing theories, placing the origin in either South America or in central Mexico, both of which are centers of diversity of Solanum host plants. To test these competing hypotheses, we conducted detailed phylogeographic and approximate Bayesian computation analyses, which are suitable approaches to unraveling complex demographic histories. Our analyses used microsatellite markers and sequences of four nuclear genes sampled from populations in the Andes, Mexico, and elsewhere. To infer the ancestral state, we included the closest known relatives Phytophthora phaseoli, Phytophthora mirabilis, and Phytophthora ipomoeae, as well as the interspecific hybrid Phytophthora andina. We did not find support for an Andean origin of P. infestans; rather, the sequence data suggest a Mexican origin. Our findings support the hypothesis that populations found in the Andes are descendants of the Mexican populations and reconcile previous findings of ancestral variation in the Andes. Although centers of origin are well documented as centers of evolution and diversity for numerous crop plants, the number of plant pathogens with a known geographic origin are limited. This work has important implications for our understanding of the coevolution of hosts and pathogens, as well as the harnessing of plant disease resistance to manage late blight. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24889615</PMID><DateCompleted><Year>2014</Year><Month>09</Month><Day>12</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1091-6490</ISSN><JournalIssue CitedMedium="Internet"><Volume>111</Volume><Issue>24</Issue><PubDate><Year>2014</Year><Month>Jun</Month><Day>17</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes.</ArticleTitle><Pagination><MedlinePgn>8791-6</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1073/pnas.1401884111</ELocationID><Abstract><AbstractText>Phytophthora infestans is a destructive plant pathogen best known for causing the disease that triggered the Irish potato famine and remains the most costly potato pathogen to manage worldwide. Identification of P. infestan's elusive center of origin is critical to understanding the mechanisms of repeated global emergence of this pathogen. There are two competing theories, placing the origin in either South America or in central Mexico, both of which are centers of diversity of Solanum host plants. To test these competing hypotheses, we conducted detailed phylogeographic and approximate Bayesian computation analyses, which are suitable approaches to unraveling complex demographic histories. Our analyses used microsatellite markers and sequences of four nuclear genes sampled from populations in the Andes, Mexico, and elsewhere. To infer the ancestral state, we included the closest known relatives Phytophthora phaseoli, Phytophthora mirabilis, and Phytophthora ipomoeae, as well as the interspecific hybrid Phytophthora andina. We did not find support for an Andean origin of P. infestans; rather, the sequence data suggest a Mexican origin. Our findings support the hypothesis that populations found in the Andes are descendants of the Mexican populations and reconcile previous findings of ancestral variation in the Andes. Although centers of origin are well documented as centers of evolution and diversity for numerous crop plants, the number of plant pathogens with a known geographic origin are limited. This work has important implications for our understanding of the coevolution of hosts and pathogens, as well as the harnessing of plant disease resistance to manage late blight. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Goss</LastName><ForeName>Erica M</ForeName><Initials>EM</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Emerging Pathogens Institute, University of Florida, Gainesville, FL 32611;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tabima</LastName><ForeName>Javier F</ForeName><Initials>JF</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cooke</LastName><ForeName>David E L</ForeName><Initials>DE</Initials><AffiliationInfo><Affiliation>The James Hutton Institute, Invergowrie, Dundee DD2 5DA, Scotland;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Restrepo</LastName><ForeName>Silvia</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, University of the Andes, 110321 Bogota, Colombia;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fry</LastName><ForeName>William E</ForeName><Initials>WE</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Ithaca, NY 14853;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Forbes</LastName><ForeName>Gregory A</ForeName><Initials>GA</Initials><AffiliationInfo><Affiliation>CIP China Center for Asia and the Pacific, International Potato Center, Beijing 100081, China;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fieland</LastName><ForeName>Valerie J</ForeName><Initials>VJ</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cardenas</LastName><ForeName>Martha</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Biological Sciences, University of the Andes, 110321 Bogota, Colombia;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Grünwald</LastName><ForeName>Niklaus J</ForeName><Initials>NJ</Initials><AffiliationInfo><Affiliation>Horticultural Crops Research Laboratory, US Department of Agriculture Agricultural Research Service, Corvallis, OR 97330; andDepartment of Botany and Plant Pathology and Center for Genome Biology and Biocomputing, Oregon State University, Corvallis, OR 97331 grunwaln@science.oregonstate.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList 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Goss</name></region><name sortKey="Fieland, Valerie J" sort="Fieland, Valerie J" uniqKey="Fieland V" first="Valerie J" last="Fieland">Valerie J. Fieland</name><name sortKey="Fry, William E" sort="Fry, William E" uniqKey="Fry W" first="William E" last="Fry">William E. Fry</name><name sortKey="Grunwald, Niklaus J" sort="Grunwald, Niklaus J" uniqKey="Grunwald N" first="Niklaus J" last="Grünwald">Niklaus J. Grünwald</name><name sortKey="Tabima, Javier F" sort="Tabima, Javier F" uniqKey="Tabima J" first="Javier F" last="Tabima">Javier F. Tabima</name></country><country name="Royaume-Uni"><region name="Écosse"><name sortKey="Cooke, David E L" sort="Cooke, David E L" uniqKey="Cooke D" first="David E L" last="Cooke">David E L. Cooke</name></region></country><country name="Colombie"><noRegion><name sortKey="Restrepo, Silvia" sort="Restrepo, Silvia" uniqKey="Restrepo S" first="Silvia" last="Restrepo">Silvia Restrepo</name></noRegion><name sortKey="Cardenas, Martha" sort="Cardenas, Martha" uniqKey="Cardenas M" first="Martha" last="Cardenas">Martha Cardenas</name></country><country name="République populaire de Chine"><noRegion><name sortKey="Forbes, Gregory A" sort="Forbes, Gregory A" uniqKey="Forbes G" first="Gregory A" last="Forbes">Gregory A. Forbes</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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